SNP Profiles of IMC 14   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCGTTTTCCTTGTCCAAGGCTAATT
1._RUQ_1634
_AGCGTT___GT___CTAA_
2._RUQ_1634
__CG____GT__GG_AA_
3._IMC_14
CCAGCGTTTTCCTTGTCCAAGGCTAATT
4._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCAAGGCTAATT
5._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCAAGGCTAATT
6._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCAAGGCTAATT
7._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCAAGGCTAATT
8._IMC_14
CCAGCGTTTTCCTTGTCCAAGGCTAATT
9._IMC_14
CCAGCGTTTTCCTTGTCCAAGGCTAATT
10._IMC_14
CCAGCGTTTTCCTTGTCCAAGGCTAATT
11._IMC_14
CCAGCGTTTTCCTTGTCCAAGGCTAATT
12._GC-04-054-3-18
CCAGCGTTTTCCTTGTCCAAGGCTAATT
13._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCAAGGCTAATT
14._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCAAGGCTAATT
15._IMC_14
CCAGCGTTTTCCTTGTCCAAGGCTAATT
16._IMC_14
CCAGCGTTTTCCTTGTCCAAGGCTAATT
17._IMC_14
CCAGCGTTTTCCTT_CCAAGGCTAATT
18._IMC_14
CCAGCGTTTTCCTT_CCAAGGCTAATT
19._GC-03-030-3-09
CCAGCGTTTTCCTT_CCAAGGCTAATT
20._GC-03-030-3-09
CCAGCGTTTTCCTT_CCAAGGCTAATT
21._IMC_14
CCAGCGTTTTCCTT_CCAAGGCTAATT
22._GC-03-030-3-09
CCAGCGTTTTCCTT_CCAAGGCTAATT
23._GC-03-030-3-09
CCAGCGTTTT_TT_CCAAGGCTAATT
24._GC-03-030-3-09
CCAGCGTTTT_TT_CCAAGGCTAATT
25._IMC_14
CCAGCGTTTT_TT_CCAAGGCTAATT
26._IMC_14
CCAGCGTTTT_TT_CCAAGGCTAATT
27._GC-03-030-3-09
CCAGCGTTTT_TT_CCAAGGCTAA_
28._IMC_14
CCAGCGTTTT_TT_CCAAGGCTAA_
29._RUQ_1634
CTAG_CTTTAACCTTCTAAAACTAGCT
30._GC-03-30-3-9
GGAGCGAAAACCAAAA_AAGGAGAAAA
31._RUQ_1634
GGAGCGAAAACCAAAA_AAGGAGAAAA
 1516171819202122232425262728
_Input profile
AAGGCCCCCCGGAACCAAGGGGCTCCAA
1._RUQ_1634
___CCCCGG_CCAAGGGGCTCCAA
2._RUQ_1634
____CCGGAA_AAGG__CC_
3._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
4._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
5._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
6._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
7._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
8._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
9._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
10._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
11._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
12._GC-04-054-3-18
AAGGCCCCCCGGAACCAAGGGGCTCCAA
13._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
14._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
15._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
16._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
17._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
18._IMC_14
AAGGCCCCCCGGAACCAAGGGGCTCCAA
19._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
20._GC-03-030-3-09
AAGGCCCCCCGGAACCAAGGGGCTCCAA
21._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
22._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
23._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
24._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
25._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
26._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
27._GC-03-030-3-09
AAGGCCCCCCGG_CCAAGGGGCTCCAA
28._IMC_14
AAGGCCCCCCGG_CCAAGGGGCTCCAA
29._RUQ_1634
AAGGTTCCGGGGAGCTCCCCTTCTCCAG
30._GC-03-30-3-9
AAGGGGGGGGCC_GGAAGGCC_CC_
31._RUQ_1634
AAGGGGGGGGCC_GGAAGGCC_CC_
 29303132333435363738    
_Input profile
GGAATTAGACCTGTACTTGGX_XX_XX_XX_X
1._RUQ_1634
_AATTAGACCTGTAC__X_XX_XX_XX_X
2._RUQ_1634
___AG___AC__X_XX_XX_XX_X
3._IMC_14
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
4._GC-03-030-3-09
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
5._GC-03-030-3-09
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
6._GC-03-030-3-09
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
7._GC-03-030-3-09
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
8._IMC_14
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
9._IMC_14
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
10._IMC_14
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
11._IMC_14
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
12._GC-04-054-3-18
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
13._GC-03-030-3-09
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
14._GC-03-030-3-09
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
15._IMC_14
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
16._IMC_14
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
17._IMC_14
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
18._IMC_14
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
19._GC-03-030-3-09
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
20._GC-03-030-3-09
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
21._IMC_14
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
22._GC-03-030-3-09
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
23._GC-03-030-3-09
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
24._GC-03-030-3-09
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
25._IMC_14
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
26._IMC_14
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
27._GC-03-030-3-09
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
28._IMC_14
GGAATTAGAACTGTACTTGGX_XX_XX_XX_X
29._RUQ_1634
GGAACTAAACCTGTCCTTGGX_XX_XX_XX_X
30._GC-03-30-3-9
GGAAAAAGACAGACACTTGGX_XX_XX_XX_X
31._RUQ_1634
GGAAAAAGACAGACACTTGGX_XX_XX_XX_X

Input profile: IMC_14

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

1._IMC_14 RUQ_1634

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._IMC_14 RUQ_1634

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._IMC_14

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

4._IMC_14 GC-03-030-3-09

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._IMC_14 GC-03-030-3-09

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._IMC_14 GC-03-030-3-09

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._IMC_14 GC-03-030-3-09

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._IMC_14

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

9._IMC_14

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

10._IMC_14

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

11._IMC_14

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

12._IMC_14 GC-04-054-3-18

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._IMC_14 GC-03-030-3-09

98.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._IMC_14 GC-03-030-3-09

98.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._IMC_14

98.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

16._IMC_14

98.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

17._IMC_14

98.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

18._IMC_14

98.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

19._IMC_14 GC-03-030-3-09

98.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

20._IMC_14 GC-03-030-3-09

98.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

21._IMC_14

98.6 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

22._IMC_14 GC-03-030-3-09

98.6 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

23._IMC_14 GC-03-030-3-09

98.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

24._IMC_14 GC-03-030-3-09

98.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

25._IMC_14

98.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

26._IMC_14

98.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

27._IMC_14 GC-03-030-3-09

98.5 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

28._IMC_14

98.5 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

29._IMC_14 RUQ_1634

62.2 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

52.9 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

52.9 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25